TiDEomics - Time-course Differential Expression analysis of omics data

TiDEomics provides an integrated workflow for multi-group time-course omics data analysis. It uses model-based differential expression, variance decomposition, and co-expression module analysis with WGCNA to characterise temporal, group, and group-specific temporal effects. Multi-dataset and multi-omics comparisons and consensus module identification can be performed using shared features. The package includes quality control, data processing, functional enrichment, and integrated visualisation. It supports data with missing values, and operates on SummarizedExperiment objects for interoperability with the Bioconductor ecosystem.